Genomic surveillance reveals multiple introductions of SARS-CoV-2 into Northern California

The coronavirus disease 2019 (COVID-19) pandemic caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has spread globally, with >365,000 cases in California as of 17 July 2020. We investigated the genomic epidemiology of SARS-CoV-2 in Northern California from late January to mid-March 2020, using samples from 36 patients spanning nine counties and the Grand Princess cruise ship. Phylogenetic analyses revealed the cryptic introduction of at least seven different SARS-CoV-2 lineages into California, including epidemic WA1 strains associated with Washington state, with lack of a predominant lineage and limited transmission among communities. Lineages associated with outbreak clusters in two counties were defined by a single base substitution in the viral genome. These findings support contact tracing, social distancing, and travel restrictions to contain the spread of SARS-CoV-2 in California and other states

Non-destructive evaluation of articular cartilage defects using near-infrared (NIR) spectroscopy in osteoarthritic rat models and its direct relation to Mankin Score

Objective The aim of this study was to demonstrate the potential of near-infrared (NIR) spectroscopy for categorizing cartilage degeneration induced in animal models. Method Three models of osteoarthritic degeneration were induced in laboratory rats via one of the following methods: (i) menisectomy (MSX); (ii) anterior cruciate ligament transaction (ACLT); and (iii) intra-articular injection of mono-ido-acetete (1 mg) (MIA), in the right knee joint, with 12 rats per model group. After 8 weeks, the animals were sacrificed and tibial knee joints were collected. A custom-made nearinfrared (NIR) probe of diameter 5 mm was placed on the cartilage surface and spectral data were acquired from each specimen in the wavenumber range 4 000 – 12 500 cm−1. Following spectral data acquisition, the specimens were fixed and Safranin–O staining was performed to assess disease severity based on the Mankin scoring system. Using multivariate statistical analysis based on principal component analysis and partial least squares regression, the spectral data were then related to the Mankinscores of the samples tested. Results Mild to severe degenerative cartilage changes were observed in the subject animals. The ACLT models showed mild cartilage degeneration, MSX models moderate, and MIA severe cartilage degenerative changes both morphologically and histologically. Our result demonstrate that NIR spectroscopic information is capable of separating the cartilage samples into different groups relative to the severity of degeneration, with NIR correlating significantly with their Mankinscore (R2 = 88.85%). Conclusion We conclude that NIR is a viable tool for evaluating articularcartilage health and physical properties such as change in thickness with degeneration

Kwentong Dubberkads : Naratibo ng Mga Pilipinong Dubber sa Panahon ng Pandemya

Sinuri ng pag-aaral kung paano nagbago ang buhay ng mga Pilipinong dubber sa panahon ng pandemya at kung paano nakaapekto ang COVID-19 sa industriya ng dubbing sa bansa. Mula sa pakikipanayam sa pitong dubbers, natuklasan ang sumusunod: 1) Nawalan ng pangunahing pinagkukuhanan ng kita ang mga dubbers mula nang magkaroon ng pandemya at maipatupad ang mga lockdown sa bansa; 2) Sinikap ng mga dubbers na humanap ng ibang paraan upang kumita katulad ng pagtatayo ng mga sariling negosyo, pagbuo ng YouTube channels, pamamasukan bilang driver, pagtanggap ng mga proyekto sa pagsulat, at iba pa; 3) Bagama’t mahirap at malayo sa nakasanayang proseso ng dubbing sa loob ng studio, sinubukan ng mga dubbers ang dub from home setup at individual dubbing; 4) Hindi naging madali para sa mga dubbers ang ganitong mga bagong setup sapagkat naapektuhan ng kawalan ng sapat at angkop na kagamitan ang kalidad ng mga materyal na nabubuo sa loob ng tahanan. Limitado rin ang kasanayan nila upang gawin sa loob ng tahanan ang iba’t ibang tungkulin na kinakailangan sa produksiyon; at, 5) Bagama’t nagdulot ng negatibong epekto sa mga dubbers ang pandemya ay nagbukas din ito ng iba’t ibang posibilidad para sa industriya. Mahalaga ang artikulo sapagkat hindi lamang nito itinatala ang kuwento at karanasan ng mga dubbers na matapang na humarap sa COVID-19, bagkus ay inilalarawan din nito ang nagbabanyuhay na industriya ng dubbing sa bansa sa kabila ng pandemya, globalisasyon, rebolusyong pang-industriya 4.0, at paghahanda sa post-pandemic era o pagtatapos ng pandemya

Structural Evolution of Polyelectrolyte Complex Core Micelles and Ordered-Phase Bulk Materials

The kinetics of formation and structural evolution of novel polyelectrolyte complex materials formed by the assembly of water-soluble di- and triblock copolymers, with one neutral block and one (or two) cationic or anionic blocks, have been investigated. Comparison was made between the assembly of ABA and AB′ copolymers in which A represents the ionic blocks and B and B′ are the neutral poly­(ethylene oxide) blocks. The degree of polymerization of B was twice that of B′ and the ionic A blocks were of equal degrees of polymerization in all polymers. The mechanism and speed of the assembly process, and the organization of these domains, was probed using dynamic mechanical spectroscopy and small-angle X-ray scattering (SAXS). SAXS revealed that the equilibrium morphologies of both the diblock copolymer and the triblock copolymer materials were generally qualitatively the same with some apparent quantitative differences in phase boundaries, possibly attributable to lack of full equilibration. Slow kinetics and difficulties in reaching equilibrium phase structures, especially in triblock materials, is a principal message of this article. Detailed analysis of the SAXS data revealed that the triblock copolymer materials formed ordered phases via a nucleation and growth pathway and that the addition of small amounts (∼20%) of corresponding diblock copolymers increased the rate of structure formation and enhanced several key physical properties

Genetic variants of DNA repair-related genes predict efficacy of TAS-102 in patients with refractory metastatic colorectal cancer.

Background Tri-phosphorylated trifluridine (FTD) incorporation into DNA is TAS-102's main anti-tumor action. We tested whether genetic polymorphisms in homologous recombination (HR) and cell cycle checkpoint pathway for DNA repair is associated with outcomes in refractory metastatic colorectal cancer (mCRC) patients treated with TAS-102. Patients and methods We analyzed genomic DNA extracted from 233 samples of three cohorts: an evaluation cohort of 52 patients receiving TAS-102, a validation cohort of 129 patients receiving TAS-102 and a control cohort of 52 patients receiving regorafenib. Single nucleotide polymorphisms of genes involved in HR (ATM, BRCA1, BRCA2, XRCC3, FANCD2, H2AX, RAD51) and cell cycle checkpoint (ATR, CHEK1, CHEK2, CDKN1A, TP53, CHE1, PIN1, PCNA) were analyzed by PCR-based direct sequencing. Results In univariate analysis for the evaluation cohort, patients with any G allele in ATM rs609429 had longer overall survival (OS) than those with the C/C variant (8.7 vs. 4.4 months, HR 0.37, 95% CI: 0.14-0.99, P = 0.022). Patients carrying any A allele in XRCC3 rs861539 had significantly longer progression-free survival (PFS) (3.8 vs. 2.3 months, HR 0.44, 95% CI: 0.21-0.92, P = 0.024) and OS (15.6 vs. 6.3 months, HR 0.25, 95% CI: 0.08-0.79, P = 0.012) than those with the G/G variant. In multivariable analysis, ATM rs609429 remained significant for OS (P = 0.020). In the validation cohort, patients having ATM rs609429 with any G allele showed longer OS and PFS; the G/A variant in XRCC3 rs861539 showed longer OS, though without statistical significance. Conclusion Genetic variants in the HR pathway may predict clinical outcome in mCRC patients receiving TAS-102